Direct Counting Analysis on Network Generated by Discrete Dynamics

A detail study on the In-degree Distribution (ID) of Cellular Automata is obtained by exact enumeration. The results indicate large deviation from multiscaling and classification according to ID are discussed. We further augment the transfer matrix as such the distributions for more complicated rules are obtained. Dependence of In-degree Distribution on the lattice size have also been found for some rules including R50 and R77.Comment: 8 pages, 11 figure

Investigation of Structural Dynamics of Enzymes and Protonation States of Substrates Using Computational Tools.

This review discusses the use of molecular modeling tools, together with existing experimental findings, to provide a complete atomic-level description of enzyme dynamics and function. We focus on functionally relevant conformational dynamics of enzymes and the protonation states of substrates. The conformational fluctuations of enzymes usually play a crucial role in substrate recognition and catalysis. Protein dynamics can be altered by a tiny change in a molecular system such as different protonation states of various intermediates or by a significant perturbation such as a ligand association. Here we review recent advances in applying atomistic molecular dynamics (MD) simulations to investigate allosteric and network regulation of tryptophan synthase (TRPS) and protonation states of its intermediates and catalysis. In addition, we review studies using quantum mechanics/molecular mechanics (QM/MM) methods to investigate the protonation states of catalytic residues of β-Ketoacyl ACP synthase I (KasA). We also discuss modeling of large-scale protein motions for HIV-1 protease with coarse-grained Brownian dynamics (BD) simulations

Quantum Teleportation of Light

Requirements for the successful teleportation of a beam of light, including its temporal correlations, are discussed. Explicit expressions for the degrees of first- and second-order optical coherence are derived. Teleportation of an antibunched photon stream illustrates our results.Comment: 4 pages, 5 figure

Theory of ultrafast quasiparticle dynamics in high-temperature superconductors: Pump fluence dependence

We present a theory for the time-resolved optical spectroscopy of high-temperature superconductors at high excitation densities with strongly anisotropic electron-phonon coupling. A signature of the strong coupling between the out-of-plane, out-of-phase O buckling mode ($B_{1g}$) and electronic states near the antinode is observed as a higher-energy peak in the time-resolved optical conductivity and Raman spectra, while no evidence of the strong coupling between the in-plane Cu-O breathing mode and nodal electronic states is observed. More interestingly, it is observed that under appropriate conditions of pump fluence, this signature exhibits a re-entrant behavior with time delay, following the fate of the superconducting condensate.Comment: 5 pages, 3 embedded eps figures, to appear in PR

SUSY Hidden in the Continuum

We study models where the superpartners of the ordinary particles have continuous spectra rather than being discrete states, which can occur when the supersymmetric standard model is coupled to an approximately conformal sector. We show that when superpartners that are well into the continuum are produced at a collider they tend to have long decay chains that step their way down through the continuum, emitting many fairly soft standard model particles along the way, with a roughly spherical energy distribution in the center of mass frame.Comment: 26 pages, 9 figures. Update of Fig.5 and added aknowledgement

Creation and pinning of vortex-antivortex pairs

Computer modeling is reported about the creation and pinning of a magnetic vortex-antivortex (V-AV) pair in a superconducting thin film, due to the magnetic field of a vertical magnetic dipole above the film, and two antidot pins inside the film. For film thickness $= 0.1\xi$, $\kappa = 2$, and no pins, we find the film carries two V-AV pairs at steady state in the imposed flux range $2.10\Phi_0 < \Phi^+ < 3.0\Phi_0$, and no pairs below. With two antidot pins suitably introduced into the film, a single V-AV pair can be stable in the film for $\Phi^+ \ge 1.3\Phi_0$. At pin separation $\ge 17\xi$, we find the V-AV pair remains pinned after the dipole field is removed, and, so can represent a 1 for a nonvolatile memory.Comment: 8 pages, 6 figure

Observation of the spontaneous vortex phase in the weakly ferromagnetic superconductor ErNi2_{2}B2_{2}C: A penetration depth study

The coexistence of weak ferromagnetism and superconductivity in ErNi$_{2}$B$_{2}$C suggests the possibility of a spontaneous vortex phase (SVP) in which vortices appear in the absence of an external field. We report evidence for the long-sought SVP from the in-plane magnetic penetration depth $\Delta \lambda (T)$ of high-quality single crystals of ErNi$_{2}$B$_{2}$C. In addition to expected features at the N\'{e}el temperature $T_{N}$ = 6.0 K and weak ferromagnetic onset at $T_{WFM}=2.3$K, $\Delta \lambda (T)$ rises to a maximum at $T_{m}=0.45$ K before dropping sharply down to $\sim$0.1 K. We assign the 0.45 K-maximum to the proliferation and freezing of spontaneous vortices. A model proposed by Koshelev and Vinokur explains the increasing $\Delta \lambda (T)$ as a consequence of increasing vortex density, and its subsequent decrease below $T_{m}$ as defect pinning suppresses vortex hopping.Comment: 5 pages including figures; added inset to Figure 2; significant revisions to tex

Entangled-State Cycles of Atomic Collective-Spin States

We study quantum trajectories of collective atomic spin states of $N$ effective two-level atoms driven with laser and cavity fields. We show that interesting ``entangled-state cycles'' arise probabilistically when the (Raman) transition rates between the two atomic levels are set equal. For odd (even) $N$, there are $(N+1)/2$ ($N/2$) possible cycles. During each cycle the $N$-qubit state switches, with each cavity photon emission, between the states $(|N/2,m>\pm |N/2,-m>)/\sqrt{2}$, where $|N/2,m>$ is a Dicke state in a rotated collective basis. The quantum number $m$ ($>0$), which distinguishes the particular cycle, is determined by the photon counting record and varies randomly from one trajectory to the next. For even $N$ it is also possible, under the same conditions, to prepare probabilistically (but in steady state) the Dicke state $|N/2,0>$, i.e., an $N$-qubit state with $N/2$ excitations, which is of particular interest in the context of multipartite entanglement.Comment: 10 pages, 9 figure

Induced Ferromagnetism at BiFeO3/YBa2Cu3O7 Interfaces

Transition metal oxides (TMOs) exhibit many emergent phenomena ranging from high-temperature superconductivity and giant magnetoresistance to magnetism and ferroelectricity. In addition, when TMOs are interfaced with each other, new functionalities can arise, which are absent in individual components. Here, we report results from first-principles calculations on the magnetism at the BiFeO3/YBa2Cu3O7 interfaces. By comparing the total energy for various magnetic spin configurations inside BiFeO3, we are able to show that a metallic ferromagnetism is induced near the interface. We further develop an interface exchange-coupling model and place the extracted exchange coupling interaction strengths, from the first-principles calculations, into a resultant generic phase diagram. Our conclusion of interfacial ferromagnetism is confirmed by the presence of a hysteresis loop in field-dependent magnetization data. The emergence of interfacial ferromagnetism should have implications to electronic and transport properties.Comment: 13 pages, 4 figure